PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0031.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 81aa    MW: 8519.82 Da    PI: 8.7786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.3e-28776169
               DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69
                         +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar+
  Kaladp0088s0031.1.p  7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAQFAAIHKVFGASNVSKLLAHLPVSDRSEAALTISYEAQARI 76
                         7*************************89****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.617680IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-27777IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MTGSSSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAQFAAI HKVFGASNVS KLLAHLPVSD  60
RSEAALTISY EAQARIAGEQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300786.23e-46hypothetical protein POPTR_0002s04200g
RefseqXP_011028777.13e-46PREDICTED: LOB domain-containing protein 29
SwissprotQ9SLB62e-43LBD17_ARATH; LOB domain-containing protein 17
TrEMBLB9GS343e-46B9GS34_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04200.18e-46(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-44LBD family protein