PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0069s0062.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 884aa    MW: 101762 Da    PI: 8.4918
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0069s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.51.9e-22177262287
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                          fYn+Y+ ++GF +r++ + ks++n+e+++ +fvC+k+g+r+ ++k+   k  +++ +tr+gC ak++++++ + +w v+k++  HnH
  Kaladp0069s0062.1.p 177 FYNDYSLNLGFGIRIHGHIKSRTNQEVIRWQFVCNKQGHRNLKDKRqLGKDVKPHRQTRVGCMAKMEITLR-NCEWIVDKFDDIHNH 262
                          ****************************************9988875678899******************.9************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-20177262IPR004330FAR1 DNA binding domain
PfamPF105511.5E-31387480IPR018289MULE transposase domain
PROSITE profilePS509669.903667705IPR007527Zinc finger, SWIM-type
SMARTSM005753.1E-6680707IPR006564Zinc finger, PMZ-type
PfamPF044344.1E-5680704IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.101.1E-4848870IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MNAPRRSGTG GGSASEGDEV GVLEPDGRRK LITDGRHHIY DLFDWFYIVH GTEIVISKTK  60
HTFISPAACD RERETRAPFD SSLPCLRCCS ETKVTASSFE SIFLGFLTQW DEDDIIIDHI  120
EKGVDQLAPN DTSNKYEKGG DEANCENSDV NILSHIEPMN SSIIGKVFAS KDDAYTFYND  180
YSLNLGFGIR IHGHIKSRTN QEVIRWQFVC NKQGHRNLKD KRQLGKDVKP HRQTRVGCMA  240
KMEITLRNCE WIVDKFDDIH NHVPTTPSKV MKHRSHNKFH QTPIVKNLVY ELNKKGMKPS  300
TITRVVNAIS CSEEVKITSK QCPDMLRAER KNHVGRECHG IVRHFHEKSQ SDGSHYFAMD  360
LASDGSLKSV FWVDGRSRSA YSQFGDVLVF DVTYRTNHFR LPFAPFVGVN HHRQSILFDA  420
ALLEDETEVT FIWLFEQFLN CMFHKQPLTI ITDQDGAMRN AIRKIFCNTR HRLCAWHINK  480
HVIEHLHPYN IRYANFGESY TKWQKSKTIE EFELGWEMMK SRYNITKGSW LDDMYTQRYY  540
WVKVYLKDCF TAGMTTSGRS ESMNSYFDGY VNSNTMLNDF VKQYDKAVES RRNKEADEDF  600
RTLESHAMPL TNYPIEKQAG MLYTRNLFEI FKSEWRKNFD CIHKTNNKGD NFVEYLVGRH  660
SLDVNHWRIV NYLSSGDISI KCSCCKFEME GILCKHILYI CEKKNLEVIP ENYFLPRWTI  720
NARYKGNMSK TLVGSSELIG APPSPLGMWS VQRKFTIALE ACRTSPTDMK LLESLLDNYI  780
DKVGSKRPNE RVTNPEEDGS EKDRPSLVFV NDQCRMTVRD PATLAKNKGR PPLMKRMQSG  840
LELAAKAKKQ KTCRTCNEKG HNSSGCSQRK AKAVEALSTS NDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5