PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0068s0291.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 466aa    MW: 53621.7 Da    PI: 8.8444
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0068s0291.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.33.4e-1592177490
                 FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHela 90 
                           eY+ ++GF+ r++ ++ +  +  + +    C+kegkr e+++   +++r+raetrt+Ck k+ +++e    gk++++ l+leHnH l 
  Kaladp0068s0291.1.p  92 TEYGATTGFTPRITVTQAE--KMDCRRTPCLCNKEGKRGENSDL-MTKKRERAETRTSCKVKFGIHREPsaFGKYRIYMLHLEHNHLLH 177
                          68************99888..44579999***********9998.99********************998889*************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1192176IPR004330FAR1 DNA binding domain
PfamPF105511.2E-27273366IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEDRTSTRAR LSECRCVGEY YRIQISDQVM CSLFLFLLSS PATVFAANFC FCLPVKLLIE  60
LPKYLLHGTK MGMIPKLGMD FDSVEDAWVF RTEYGATTGF TPRITVTQAE KMDCRRTPCL  120
CNKEGKRGEN SDLMTKKRER AETRTSCKVK FGIHREPSAF GKYRIYMLHL EHNHLLHTRA  180
TIHMMPSQRH ITEIQANEIE LADASVIQVK RSHEFMSKKA GGVEGTGFIE LDHKNFLRTR  240
RQRELRYDNE KQITNIFWAD ANMRIDYGLF GDVVSFDTTY STNKESRPFG VFVGLNHHRS  300
TVIFGAAILY DETAASFKWL FQSFLNCHNQ KHPKTLFMDQ DPAMAKAIRT VMQGTYHGLC  360
TFHIMLNGIR HLGNLMKGGS SFLTHFQECM HGFSSEEAFE NAWQEMLCKY YVQGNKWLLS  420
IYKIKEKWAS CYLKNVHSLG MHSTQLSESC NAELKRHLKS SFSLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305434.11e-134PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A151RX651e-133A0A151RX65_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRINGBGIOSGA036688-PA1e-122(Oryza sativa Indica Group)
STRINGLOC_Os12g03660.11e-122(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-59FAR1-related sequence 5