PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0156.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 193aa    MW: 21147.9 Da    PI: 5.3055
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260911.4e-282104198
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC+l++ +     p++q  ++ +v+++FG++ + ++++a+p ++r+ +++sl++eA  r+ +Pv+G++g+++++++
  Kaladp0062s0156.1.p   2 SCNGCRVLRKGCKEDCILRQSLewiqnPQAQGYATLFVARFFGRAGLFSFISAVPAHQRPGLFQSLLFEAAGRTVNPVSGSAGLLWTGNW 91 
                          6*************************99************************************************************** PP

               DUF260  86 qleqlkaelallk 98 
                          q +q+++e++l++
  Kaladp0062s0156.1.p  92 QACQAAVEAVLRG 104
                          *******998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6161107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSCNGCRVLR KGCKEDCILR QSLEWIQNPQ AQGYATLFVA RFFGRAGLFS FISAVPAHQR  60
PGLFQSLLFE AAGRTVNPVS GSAGLLWTGN WQACQAAVEA VLRGGSLSPE MLAVVPEIDF  120
FKEPGTVEVK TSATPDATQI ETGTMTFHEE RQHEARVDDL VEESETTTFE SSSTYNGCYR  180
SRKDLKLLSL FV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313905.12e-64hypothetical protein POPTR_0009s09270g
SwissprotQ9SN232e-59LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9HMY43e-64B9HMY4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09270.17e-64(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-60LOB domain-containing protein 38