PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 227aa    MW: 24429.8 Da    PI: 8.4285
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.4e-3041081100
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q +++ +++k++G++ ++++l+a+++++r ++++sl+yeA+ r+ dP+yGavg++++ ++
  Kaladp0062s0030.1.p   4 SCNGCRVLRKGCPDDCNIRPCLswitsPEAQGNATVFLAKFYGRAGLMNFLNATSDHHRAEIFKSLLYEACGRIVDPIYGAVGLLWSNNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallkee 100
                            ++++++++l +++
  Kaladp0062s0030.1.p  94 PHCEAAVDAVLSGRQ 108
                          ******999887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.193109IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-244101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCPDDCN IRPCLSWITS PEAQGNATVF LAKFYGRAGL MNFLNATSDH  60
HRAEIFKSLL YEACGRIVDP IYGAVGLLWS NNWPHCEAAV DAVLSGRQIV PIQNPHNPSG  120
HAIAALNSFD IRHVARPSPP EPDMAPRPAI RTKPRSARCP KHNPVRANRT ELGGIGPSDG  180
SGFSVETVEG SVANRVNPNQ CRGSDDRLEM GLELSLNLGP GPSKCI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282602.12e-70PREDICTED: LOB domain-containing protein 40
SwissprotQ9CA302e-59LBD42_ARATH; LOB domain-containing protein 42
TrEMBLF6HEW82e-70F6HEW8_VITVI; Putative uncharacterized protein
STRINGVIT_01s0011g03540.t015e-70(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-60LOB domain-containing protein 42