PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0061s0138.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 627aa    MW: 72673.1 Da    PI: 9.3576
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0061s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.71.9e-1811101190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHe 88 
                          +f+ e++ ++GF+ r+ +s++s+++g   ++ fvC+kegkr+ee++    ++r+raetrt+ + kl +++e    gk++v++l+leHnH 
  Kaladp0061s0138.1.p  11 EFWTEFGARTGFTPRRFYSHTSRKDGLLSNAVFVCNKEGKRSEESEL-MMKKRERAETRTSSQVKLGIHREPttFGKYRVYRLHLEHNHV 99 
                          69******************************************999.999*******************99889**************9 PP

                 FAR1  89 la 90 
                          l 
  Kaladp0061s0138.1.p 100 LH 101
                          86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1411101IPR004330FAR1 DNA binding domain
PfamPF105517.0E-28223316IPR018289MULE transposase domain
PROSITE profilePS509669.297432468IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MDFDSVEDAW EFWTEFGART GFTPRRFYSH TSRKDGLLSN AVFVCNKEGK RSEESELMMK  60
KRERAETRTS SQVKLGIHRE PTTFGKYRVY RLHLEHNHVL HTRATVHMMP SQRHITRIQA  120
NEIELADASG IQIKRSHELM SKRSGGVEGT GFIELDHKNF LRTRRQRELR YGDAGSILSY  180
FAQKTKENPF FYYDLQLDNE EQITNIFWAD AKMRIDYGLF GDVASFDTTY STNKESRPFG  240
VFVGLNHHRS TVIFGAAILY DETAASFEWL FQSFLNCHSQ KRPKTIFTDQ DPAMAKAICS  300
VMQGTYHGLC TFHIMLNGIR HLGNLMKGGS SFLTHFQECM YNYSSEEAFE NAWLSMVSKY  360
YVQGNKWLLS IYKIKEKWAS CYMKNVHSLG MRSTQLSESC NAELKRHLKS IIQCDKRVGQ  420
YDLKSFFDGD EATVSFDHVN EVLLCSCKKF EDWGFLCRHA IRVLDLNFIF KIPKKYILLR  480
WTRDVVTHQV KDTNGCDVHE DVHLDVTKRY QHLCPKLVRL ADYAAQSTKG YEFVLSQISE  540
WMKTVEIKSE EHIPNLPTYD AAPPMCYQGK EVKGLAKKVR MNKGGKRLKP WFEKKSNKKV  600
YENKGKQPNN LAKIGYVKHG VSFLAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-72FAR1-related sequence 5