PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0482.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 210aa    MW: 23084 Da    PI: 8.1556
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0482.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.72.8e-4581071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGa+nv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql
  Kaladp0055s0482.1.p   8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGAANVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQL 97 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +l+ +k+e
  Kaladp0055s0482.1.p  98 QMDLSCAKSE 107
                          *****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2017108IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-448105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MASSSTSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGAANVT KLLNELHPSQ  60
REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQMD LSCAKSELSK YQSLAGSIPT  120
LHGGIYHRDH HHYFPAQHHQ FFPRDLAPPQ MIRVDGQSGN PNGNNSSSLI EGGLLAMNNV  180
TASIGQLSQF QQSARAARGD DRRAELDPS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266137.11e-90PREDICTED: LOB domain-containing protein 6
RefseqXP_010646844.11e-90PREDICTED: LOB domain-containing protein 6
RefseqXP_010646845.11e-90PREDICTED: LOB domain-containing protein 6
RefseqXP_010646846.11e-90PREDICTED: LOB domain-containing protein 6
SwissprotO044798e-83LBD6_ARATH; LOB domain-containing protein 6
TrEMBLD7SSJ31e-90D7SSJ3_VITVI; Putative uncharacterized protein
STRINGVIT_00s0340g00090.t014e-90(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.42e-75LBD family protein