PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0935.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 405aa    MW: 46671 Da    PI: 7.2486
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0935.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.44.6e-1322101179
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevt 79 
                          +f+ e++ ++GF+ ++ +++ksk++g   ++ fvC+kegkr+ee +   +++++raetrt+C+ ++ v++e    gk++v+
  Kaladp0048s0935.1.p  22 DFWIEFGARTGFTPCRFYTHKSKKDGLPSNAVFVCNKEGKRNEECDL-ITKKKERAETRTSCNVRFGVHREPttFGKYRVY 101
                          6999***************************************9888.9999****************9998666777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-922100IPR004330FAR1 DNA binding domain
PfamPF105511.4E-26222315IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTETEHIPKL GMDFDTIEDA WDFWIEFGAR TGFTPCRFYT HKSKKDGLPS NAVFVCNKEG  60
KRNEECDLIT KKKERAETRT SCNVRFGVHR EPTTFGKYRV YLATIHMMPS QCHISEIQTN  120
EIVLADASGI QVKRSHEFMS KRAGGVEGTG FIELDHKNFL RTKRQRELRY GDAGNILSYF  180
AQKTKENPFF FYDLQLDSEE QITNIFWADA RMRIDYGLFG DVACFDTTYS MNKESRPFGV  240
FVGLNHHRST VIFGAAILYD ETAASFEWLF QSFLNCHNQK HPKTLFTDQD PAMAKAIRSV  300
MLGTYHGLCT FHIMLNGIRH LGNLMKDGSS FLTHFQECMY AYSSEEAFEH AWEAMLSKYS  360
VQGNTWLLSI YKIKEKWASC YMNNVHTLGM RSTQLSESYN AELK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305434.11e-152PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A151RX651e-146A0A151RX65_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRINGBGIOSGA036688-PA1e-140(Oryza sativa Indica Group)
STRINGLOC_Os12g03660.11e-140(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-65FAR1 family protein