PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0309.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 761aa    MW: 86432.3 Da    PI: 7.0696
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0309.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.43.3e-2059154190
                 FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 
                          +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + ++  + k +r+r+++r+gC+a +++ k+      +w++t +++ 
  Kaladp0045s0309.3.p  59 EFYCSFAKQCGFSIRRHRTRGReGVGRGITRRDFTCHRGGFPQLKPSDdgKLKLQRNRKSSRCGCQAYMRIVKRAdydIPEWRITAFSNV 148
                          6***************999877355667**************99988866778899**************99887665679********* PP

                 FAR1  85 HnHela 90 
                          HnHel 
  Kaladp0045s0309.3.p 149 HNHELL 154
                          ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1759154IPR004330FAR1 DNA binding domain
PfamPF105512.2E-22276369IPR018289MULE transposase domain
PROSITE profilePS5096610.423553589IPR007527Zinc finger, SWIM-type
PfamPF044349.7E-9553587IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MSELASAVKE ASENATGSSP DDIGTIEEMP EDTILSRQTS VSLVPCIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGR EGVGRGITRR DFTCHRGGFP QLKPSDDGKL KLQRNRKSSR  120
CGCQAYMRIV KRADYDIPEW RITAFSNVHN HELLKTTEVQ LLPAYCTISP DDKSRICMFS  180
KAGMSVRQML RLLELEKGVK LGSLPFTEVD VRNLLQSFRS IDGDNDAIDL LTICKNRKDK  240
EHDFKYDFKM DANNRLEHIA WSYPSCIQSY ETFGDCVIFD TTHRLDAYDM LLGLWVGVDN  300
HGMSCLFGCV LLRDENVQSF AWALKSFSGF MNNKSPQTLL TDENMWLKDA VSVEMPQTKH  360
AFCIWHITAK FSDWFSGMLG SLYDKWKADL QLLYNLQCVE DFEVGWLDMV NTYGLHGNKH  420
ISSLYALRTF WALPYLRGYF FAGMTKAFHS ESINAYTQRF LSVQSKLVNY VDQVAAIANY  480
KDQIGVKHKM QQKIQKFSLK TGSPIEAHAA SVLTPYAFNI LQEELVLAPQ YASLMVDENY  540
FIVRHHTKLD GGYKVLWSPN DEFISCSCQH FEFCGILCRH VLRVLSTNNC FHIQNQYLPA  600
RWREEPSARS FHQSSSGSDE KACKVQLLKS MVSTLIAQST ETEERLDTAC NQVALLLSRI  660
KGFTGPSVQD DNHIAYPSPS ASLMIPEVED SDSIVQSYSS GPPQDSYSLG KLKERRPRDN  720
MDAYKKRRRC SVPCWGQLEH NAAECQMMSD DLSGDGMGFL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652225.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_010652226.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLF6HZ840.0F6HZ84_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g01120.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11