PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0044s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 686aa    MW: 78980.6 Da    PI: 7.1059
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0044s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.1e-2193188191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                          +fY+eYA+ +GF+vr+s+skk kr ++++ +   C+keg+++++  +     ++ ++r+r++ r gCka++ +k+ +++ ++v+++++eH
  Kaladp0044s0003.1.p  93 DFYKEYAHFCGFQVRVSTSKKAKRCDSVYLQYVLCNKEGFHSSKFGDrlednASVAQRRRSTARSGCKARVLLKLVENSLYVVSDFVEEH 182
                          6*****************************************99888888877788889999**************************** PP

                 FAR1  86 nHelap 91 
                          nH+++p
  Kaladp0044s0003.1.p 183 NHPMTP 188
                          ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1893188IPR004330FAR1 DNA binding domain
PfamPF105511.7E-30308401IPR018289MULE transposase domain
PROSITE profilePS5096610.237619657IPR007527Zinc finger, SWIM-type
SMARTSM005758.5E-6632659IPR006564Zinc finger, PMZ-type
PfamPF044348.5E-6634655IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAASGKERFD LNSPPLSDSS PSDSIICILQ PETADCNVDS EGQYNDCGNA DTNPDNDPQH  60
QSANRAVVVV PECDQLMKPF HGKKFNNLQE GIDFYKEYAH FCGFQVRVST SKKAKRCDSV  120
YLQYVLCNKE GFHSSKFGDR LEDNASVAQR RRSTARSGCK ARVLLKLVEN SLYVVSDFVE  180
EHNHPMTPLV HQQFLKSNRS VNCAQQNFIM DCGNLRIGAQ KSHKIMKEIC GGYSNIGAQA  240
VDFKNFKRDF KNFVGDSDGQ IVIDRLKIKQ SCCDGFRFEY HVDSNGDLRR LLWADALSQI  300
HFQAFGDCVA FDATYRTNKY NLVFVPFTGV DNHKSCISFA GALLSNEDVE SYEWLLESFR  360
KVLGSSPRIW VTDQDPAMRI AIKRVFPDSI HRLCMWHITK KFTDKVNLYH CNKCFTMSID  420
VRQTIRLLNI LLHMQLGTKL CRDKDFLHKL NGIVWNGLIE PDEFDTRWEQ IIDEYNLEEN  480
KWLADMYEMR SSWIPAFFRD IHMGGLLRTT SRSESENSFF NGFLHSGMNL TEFFMAFESA  540
MDAQRHRKEQ LDHESESTYP PLKTSLPIEK HAAEIYTRRI FFYFQTEFYE ACVGCHVSTL  600
SEKDGVKFYD IKDKSSTQQV VKVVHYTTSD YVECSCKNYQ RIGIPCRHIL LALNAEDVDK  660
IPEKFIQKRW TKYAVHIQVT TLPQC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5