PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0641.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 209aa    MW: 22988.2 Da    PI: 5.5212
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0641.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.82.8e-3671071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa++C++apyf+ +q + +f +vh++FGasn +kll +lp + r+ a+ ++ yeA ar++dP+yG+v+++l lqqq+ q
  Kaladp0039s0641.1.p   7 SCGACKFLRRKCATECIFAPYFCYDQaAVHFSAVHRVFGASNFSKLLLHLPMHSRSVAAMTVSYEALARMHDPIYGCVAHVLLLQQQVVQ 96 
                          6************************9789************************************************************* PP

               DUF260  90 lkaelallkee 100
                          l++e+++l+++
  Kaladp0039s0641.1.p  97 LEKEIEMLEKQ 107
                          *****999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7336108IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-337105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCAT ECIFAPYFCY DQAAVHFSAV HRVFGASNFS KLLLHLPMHS  60
RSVAAMTVSY EALARMHDPI YGCVAHVLLL QQQVVQLEKE IEMLEKQMAM AWFDISGAAA  120
APSSTQSANI DFYGLQVETT ELDMDVRGYS TAQQTSSQLL TASANAAAID QRSREEKSWF  180
LSPDPMGQES FMHCYAESFA ETLNTQVI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316271.11e-62LOB domain protein 33
RefseqXP_011002633.18e-63PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9LHS84e-53LBD33_ARATH; LOB domain-containing protein 33
TrEMBLB9HT791e-62B9HT79_POPTR; LOB domain protein 33
STRINGPOPTR_0010s20800.13e-62(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-48LOB domain-containing protein 33