PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0456.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 784aa    MW: 90230.3 Da    PI: 8.6135
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0456.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.71.4e-21113207190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                          +fY+eYA+++GF++rk++skk +r++++  + ++C+++g++ +++ +     ++   r+ra+trtgC+a+++ k+ +++ ++v+++ +eH
  Kaladp0032s0456.1.p 113 SFYKEYARQCGFQIRKATSKKASRSEKVNLQYMYCNRQGFNISKHYDslageSSAGFRRRASTRTGCRARVVFKNVTNSAYVVKEFIEEH 202
                          5*****************************************9999999988888889******************************** PP

                 FAR1  86 nHela 90 
                          nH+l+
  Kaladp0032s0456.1.p 203 NHQLT 207
                          ***96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-19113207IPR004330FAR1 DNA binding domain
PfamPF105514.5E-27309402IPR018289MULE transposase domain
PROSITE profilePS5096610.113592628IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-5598620IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MSSVRSSSES SEVHQLFIFH SRTKIRVAGA QNGYNESNHS DANSDVLANE AQVVSDNDFS  60
SRHSDGLDTQ HSSRNGLSVY IDEDGAQRWV PDCDSSLKPN VGRLFDTLEY AISFYKEYAR  120
QCGFQIRKAT SKKASRSEKV NLQYMYCNRQ GFNISKHYDS LAGESSAGFR RRASTRTGCR  180
ARVVFKNVTN SAYVVKEFIE EHNHQLTALE YHQFLKSNRS LNYAQILKEL SGGYSHIGAQ  240
VVDVKNFRRD FKNFVGTSDA QLIIHKFQNN KVVRPEFAFE FCVGENGALE RLFWADSTSK  300
SNYDAFGDCV VFDVTYRTNK YKLVFIPFTG VDNHKRCVTF AAGLLLKEDV ESYSWLLDVF  360
RKLMGNGPRI WVTDQDPAMK ITITRVFPQS IHRLCMWHIT KKFTEKIGSV LCSEKEFLDK  420
IDGIVWNRYY EPDEFKVAWK QLIDEYGLQG NKWLADMYDM RRNWIPAFFR DVQMGGLLRT  480
TSRSESENSF FNCFLHSGMN LVEFFFAFET VMDAQRHNKH LLDHDSTNTF PIYRTSLPIE  540
KHAATVFTHS IFYDVQREIY AACVLCDVCT ISESEGVKTY DIKDKTTMNR TFTVIHNVLT  600
NNAECSCKNF QRIGIICRHI FLALKTEDVV CIPKHFIMTR WTKDAVHQKT CNPSLSDQGS  660
GDLKSDLNEL WMEFNGLIKC VGCDNQLIKD LLDFIRNFKS QKLPETTHMS KTDLFEKLIG  720
SPRPSEIVVQ PPQQAKNKGS GKRLKSDREK ITEQAKRHPR KCRVCNRMVN HDNRNCPDKK  780
NKC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-89FAR1-related sequence 5