PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0389.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 196aa    MW: 21190.1 Da    PI: 6.8755
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0389.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.42.4e-38151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf ++q +++fa++hk+FGasn +k+l ++p+++r da+ s++yeA ar+rdPvyG+v+ i++lqqq+ +
  Kaladp0032s0389.1.p  15 PCGACKFLRRKCVSGCVFAPYFQSDQgAAHFAAIHKVFGASNASKMLLSIPPQHRLDAVVSMCYEALARVRDPVYGCVAQIFALQQQVLN 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ae+a ++++
  Kaladp0032s0389.1.p 105 LQAEVACTQAK 115
                          ******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.77214116IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3715113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSNWGGGSN TIIGPCGACK FLRRKCVSGC VFAPYFQSDQ GAAHFAAIHK VFGASNASKM  60
LLSIPPQHRL DAVVSMCYEA LARVRDPVYG CVAQIFALQQ QVLNLQAEVA CTQAKLATLR  120
PPQQPYPSDQ SLSGFPSMRC EDALQMQSWS PAELVDQGEV DDGDQEVELQ SLARQLMSRH  180
FSSSGFTFRP PTSSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090856.13e-68PREDICTED: LOB domain-containing protein 19
SwissprotO813223e-54LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A151TBN72e-64A0A151TBN7_CAJCA; LOB domain-containing protein 31
STRINGPOPTR_0014s06580.15e-60(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-55LOB domain-containing protein 31