PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0027s0036.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 665aa    MW: 76574.3 Da    PI: 7.0969
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0027s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.5e-2256140190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn YA++ GF +r+ +s  +++++e ++++f Cs+ g+++++  +     ++r+etrtgC a++ +++ + ++w+++++el+HnH+++
  Kaladp0027s0036.1.p  56 DFYNLYARQQGFGIRVGNSWFRSKQKERYRAKFSCSNAGFKRKSVAS-----HPRPETRTGCPAMVIIRLVDCKRWRIIEVELQHNHTFS 140
                          6*****************************************99887.....9**********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2056140IPR004330FAR1 DNA binding domain
PfamPF105511.4E-22262354IPR018289MULE transposase domain
PROSITE profilePS509669.334548584IPR007527Zinc finger, SWIM-type
PfamPF044349.2E-5549583IPR007527Zinc finger, SWIM-type
SMARTSM005758.3E-7559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MEVVSLNREP VFEEASHQGT DEDLELQDDT PGLALNRNPP QPTVGLEFDS FDEAYDFYNL  60
YARQQGFGIR VGNSWFRSKQ KERYRAKFSC SNAGFKRKSV ASHPRPETRT GCPAMVIIRL  120
VDCKRWRIIE VELQHNHTFS SEMKRVYKSH KKMVLAAKEE NKQDPVLETR IIKLYRTPTM  180
DSNFQLCANV GSGENRNHLE HSNNLELKDG DASTVYNFFC RLKLTDPNFF YLMDHDNEGR  240
LKNIFWADSR SRLTYKSFND TIMIETTCLA SKYELQLISF VGVNNHGYSV LLGCSLVASV  300
SVENFIWVLR TWLACMLQQP PQVVITDQSK LLQSAVAEVL PGARHCYSLW HIIQRLPEKL  360
GGLSGYEGIK NQFVNTVFSA LKFSEFETSW ELMIEQHGLG DNKWLQALHE DCQNWVPVYL  420
KNVFFAGLMP TQESDALNGF FDGYVHKHTT IKEFLDKYEL ALHRKLLKDA IADQESRTLA  480
SGLVTKSSFK LQLSKIYSKE IFKKFQAEVE GMYSCFNTKQ LVTNGPVITY LIKERLTGKG  540
HERIVKQYEV FYEATTMDVR CICCLFNFKG YLCRHALSVL NYIGIEEIPS QYILPRWCTD  600
FKCRLGQGHP SNDVDTNDQL QQYHHLIRHG IPFVEYGAQS EQDYKAVLKE LESIVDKVIS  660
LHDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282775.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_010648676.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLM5Y3I60.0M5Y3I6_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s27240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6