PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0192.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 780aa    MW: 89288.6 Da    PI: 6.4465
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0192.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.73.1e-3172163291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk +++gkw v+ +++eHnH+l
  Kaladp0018s0192.1.p  72 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQDSGKWAVSGFVKEHNHDL 161
                          9***************************************998888545677889**********************************9 PP

                 FAR1  90 ap 91 
                          +p
  Kaladp0018s0192.1.p 162 VP 163
                          86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2972163IPR004330FAR1 DNA binding domain
PfamPF105511.4E-32284376IPR018289MULE transposase domain
PfamPF044343.7E-11552598IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.707568600IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-9575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MDHEIIEFDV ELGGGGEEDG VDIENAVDYD DMGQTYSGAG GVGEVYIPEG EFLDLEPYEG  60
MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNLNEKRTKD  120
REIKRPRTIT RVGCKASLSV KIQDSGKWAV SGFVKEHNHD LVPPDQVHCL RSHRQISGPA  180
KALIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRTNRSRNM EGDLQLLLDY  240
LRQMHNENPA FFYAVQSEED QNMSNVFWAD PKARSNYSYF SDTVTLDTTY RYNRYRLPFV  300
TFTGVNSHGQ PVLFGCAFLI NESEASFVWL FNTWLTAMSG QHPSSITTDH DAIVRSAITQ  360
VFPNTRHRFC KWHIFKKCQE MLSQVFLEHP GFEADLHKCV NLTDSIDEFE SCWLSLVDKY  420
DLRDHDWLQS LYSARKQWIP VYLRDAFFAE MSISQRSDSM NSYFDGYVNA STTLNQFFKL  480
YEKAIESRHE KEIKADFETV STPPSLKTPS PMEKQVSGLY TRKTFARFQE ELVGTLTFTA  540
SKVEDDGEVI TYQVVKFGEE HKAHYVRFKV LEMRASCSCQ MFEFSGLLCR HVLAVFRVTN  600
VLTLPSHYIL KRWTRNAKSN ITLEVRSNTA YTNYLESHTV RYSTLRHEAF RFVDEGAKTM  660
DTYNVAVDAL QEAFKKVTDA AKNEGNYAVP NGRPKEAPAS VGNQASLTTQ NQLCHVTENM  720
SEDEMDKKIQ ELISELDYAN KKCEVYRSNL LSVIKDIADH KHELLVKVQN IKMDMKECA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075861.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_012075922.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067LI070.0A0A067LI07_JATCU; Uncharacterized protein
STRINGPOPTR_0004s21880.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5