PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0257.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SRS
Protein Properties Length: 222aa    MW: 24539.3 Da    PI: 8.9396
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0257.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702170.96.4e-53121523153
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                          s +++C+dCGnqak+dC+++RCRtCCksrgf C+thvkstWvpa++rr+ ++q++  +        +a+s  ++    +++ +l + + +
  Kaladp0016s0257.1.p  12 SSRMACHDCGNQAKRDCVYMRCRTCCKSRGFRCQTHVKSTWVPAYRRRHSHTQHHHHQLL------DASSTGQQ----QHAVQLLNPRGP 91 
                          56899*******************************************975544443222......22222222....345566677777 PP

               DUF702  93 saeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                          + +s  e e   +P+e+ s+a+frcv v+s +d   e++aYq+avsigGh+fkGiLydqG+e
  Kaladp0016s0257.1.p  92 NPTSGLE-EGLMFPPEITSSAMFRCVVVRSSEDnVIEQYAYQAAVSIGGHLFKGILYDQGPE 152
                          7766644.4556*****************999945688**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.2E-5215152IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.8E-271758IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-21103151IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRQGVGARSS SSSRMACHDC GNQAKRDCVY MRCRTCCKSR GFRCQTHVKS TWVPAYRRRH  60
SHTQHHHHQL LDASSTGQQQ HAVQLLNPRG PNPTSGLEEG LMFPPEITSS AMFRCVVVRS  120
SEDNVIEQYA YQAAVSIGGH LFKGILYDQG PELSRTPQHQ NPTTAPPPSH HHHHQYLGNE  180
GPSSSTAPPP LEAPATAFAT QQRPGYNPSP FQTGTHVFFH Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647684.21e-51PREDICTED: protein SHORT INTERNODES
SwissprotQ9LQZ52e-44SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
SwissprotQ9XGX02e-44SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A438I8Z38e-50A0A438I8Z3_VITVI; Protein SHORT INTERNODES
STRINGVIT_03s0038g00310.t012e-47(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-43SHI-related sequence 5
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]