PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 288aa    MW: 29389.8 Da    PI: 7.5885
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.56.4e-40341341100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+k+l+++p  +r da+ +++yeA+ar+r+PvyG+v++i++lqqq+ +
  Kaladp0016s0160.1.p  34 PCGACKFLRRKCVEGCIFAPYFDSEQgSAHFAAVHKVFGASNVSKMLQHVPLPKRLDAVVTICYEAQARLRNPVYGCVAHIFALQQQVVN 123
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ e+++l+++
  Kaladp0016s0160.1.p 124 LQGEISYLQAH 134
                          ******99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.09333135IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-3934132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSNPTIGCA PGGSSSGGGG GGGAGGGGGG GGGPCGACKF LRRKCVEGCI FAPYFDSEQG  60
SAHFAAVHKV FGASNVSKML QHVPLPKRLD AVVTICYEAQ ARLRNPVYGC VAHIFALQQQ  120
VVNLQGEISY LQAHLANLEL QTPPVQPPAP PPHNPLPHFS ISDLPTASAM PPTFDVSSLL  180
FDPVTQWPQL QPMHPQHHQQ ASDLNNPNTR DQYVTLAIPH PSSDGAQNLA PGGAAGTSGS  240
GGGDAQGLAR ELLLRHGSSY RASGASSSGA VHGSCSEAQR PSGGQPK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083561.14e-81PREDICTED: LOB domain-containing protein 18
SwissprotO221317e-66LBD18_ARATH; LOB domain-containing protein 18
SwissprotO813236e-66LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A067KAC74e-81A0A067KAC7_JATCU; Uncharacterized protein
STRINGVIT_15s0048g00830.t013e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.14e-63LBD family protein