PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0542.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 253aa    MW: 27467.7 Da    PI: 7.7236
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0542.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260691e-2152151198
               DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqle 88 
                          aCaaCk++r++C ++ Cv+ pyfp e++++f  vh++FG+ +v kll+  ++   r+++++ l + +    + P+ G ++ + ++ ++ +
  Kaladp0008s0542.1.p  52 ACAACKHQRKRCDTNtCVFQPYFPGEKKEEFDTVHRFFGVIKVKKLLEGCEPGLpRQRMADELKWISAQLNNAPIAGPLAQFIAICSENQ 141
                          7***********9877**********************************99998******************************99999 PP

               DUF260  89 qlkaelallk 98 
                          ++ka +++l+
  Kaladp0008s0542.1.p 142 TKKAIISQLH 151
                          9998877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.94451154IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-1952148IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTSSSPDVLG NEAESLRQGN GELRSGNNNA EVQGQLRSAE ALGQGNGEHR LACAACKHQR  60
KRCDTNTCVF QPYFPGEKKE EFDTVHRFFG VIKVKKLLEG CEPGLPRQRM ADELKWISAQ  120
LNNAPIAGPL AQFIAICSEN QTKKAIISQL HDYIQNLNGV LANSVAFCSN CGSAVEKPND  180
VAGQRLFPSQ SFTPDWTFNF NNNNVIAPHA GGLVSPRFAQ YRPQQMRQDG QSGQLSNIDQ  240
TTVGTAVSSD KG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-20LOB domain-containing protein 2