PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00500_0060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family LBD
Protein Properties Length: 262aa    MW: 29776.8 Da    PI: 6.5048
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00500_0060genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601192.7e-3724121198
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaC++lrrkC+++C++apyfp+++++kf  +hk++Ga+n+ k+l+++p  +r+++++sl+yeAear+ dPvyG+v+ +  lqqq+ +l+++l+ 
  kfl00500_0060  24 PCAACRFLRRKCTQECIFAPYFPQQEREKFVLLHKIYGAHNIGKFLSRVPVADRTNTVKSLTYEAEARTIDPVYGCVAAVALLQQQIVTLQSQLSG 119
                    7********************************************************************************************987 PP

         DUF260  97 lk 98 
                    ++
  kfl00500_0060 120 TR 121
                    76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.37623124IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-3724120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MATQTDELPS STPLPDVAVR DQPPCAACRF LRRKCTQECI FAPYFPQQER EKFVLLHKIY  60
GAHNIGKFLS RVPVADRTNT VKSLTYEAEA RTIDPVYGCV AAVALLQQQI VTLQSQLSGT  120
RARVQALERI RLSLMQDQTT RADLRSRRKR KSVVPMEYHT FVQSNCIEIP ERSELLSQET  180
KRARHNDYDP ITPTSALCSE IFDPDIKPLS KTWDVPACEG DPAQVFFASF DLETSESLFE  240
TSSQLDWDQF EVPPNSVKAR CF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-342411711104LOB family transfactor Ramosa2.1
5ly0_B9e-342411711104LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1II960.0A0A1Y1II96_KLENI; Lateral organ boundaries (LOB) domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.19e-37LOB domain-containing protein 25