PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00232_0130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C2H2
Protein Properties Length: 1181aa    MW: 123337 Da    PI: 7.7726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00232_0130genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05191213123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  kfl00232_0130 191 FVCEICNKGFQRDQNLQLHRRGH 213
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-5190213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-8190213No hitNo description
SMARTSM003550.017191213IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949191213IPR007087Zinc finger, C2H2
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SMARTSM0035570233263IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4256289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-8263288No hitNo description
SMARTSM00355120268288IPR015880Zinc finger, C2H2-like
SMARTSM00355200295318IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1181 aa     Download sequence    Send to blast
MFSTNEPQAA AGLTDIRKEN AHTEAQRRQS DGGRGKKLNA PGHTLEEKSR LSLKKVDTPN  60
EVHADVLLKQ NRGDGAEKLD DALPRLAPVK IPSLGAKWEY YSGAPLPQEP QSPDSERDSG  120
ESAQGPTLGK NAGKPSVMRA KSIASSISTG SNFSRSSQGG IKRKRSLPGT PDPNAEVIAL  180
SPRTLLATNR FVCEICNKGF QRDQNLQLHR RGHNVPWKLR ARPPSNSSGK RVYVCPEPTC  240
VHHDPRRALG DLTGIKKHYS RKHGEKRWKC DKCGKKYAVE ADWKAHTKTC GPKQYTCDCG  300
SVFTRRETFA THRACCKHVS DRLQPPGHPQ LSAFGSGPST HSFSNFQLPP SSFSNFGHRP  360
ILPRRLPPPA PVFTARSTPA TVAHIGQSHD GTPLLISVPA RVSGSGQPGL MADINLAARR  420
GLNREPLQLL PLSGPMWGQR SLGTPPPAAS APLPPALNLW LGSRPPATAV HQSQPLQPLA  480
IPGRVGGVKL EIGANGNGLG EMGQSSEGAT SPLSLRYAET FSQGQQTMLV APQTAGRAAS  540
PLLQPLPVSP RPEQQGGDGG SGLVSVLGGD PQAALPSAAA AAAAVAAANA GHQVTIEVNP  600
APGESLPTDH SPREQVAPPE GGAYTVLEQP PVVHPGAPLM GTSPGAPVVQ MSAVALHGGE  660
VAGMGMMEQQ SQGGQLLVAA AQVGGGDQAM LLDAQRPGGE GSPMLVGGGQ VVETNQEDVL  720
WAKMHVDEQQ KAQQAAQQAQ AQAQAQQSMQ HQMAVQQAQQ QGLQMAIHQA GIQLAAAQQA  780
QQQGLQMGGQ VDLQQSLHIS LDAPPSQVAV PGGVPVGLPP PSQQMVATQQ EMLTHAQEAE  840
QQLAAQQGLL NLQAVSQQMG LSAVPPLQRL SPGLPSMAAL HPPPGAELLP GLQQPATSPR  900
SLLAALPSGS ANTTAQGGAA DEGKKADMMQ EAISAAARGS TQKLNELIEQ EAQKQQHALA  960
LAQATEQHQH GGTAPVLAPP SVVLVEGGSP NVLPEGFVDP QAFGTPSAGQ FFATVTPQTG  1020
LTGLGSVPQG GMAAQVVGSS ILGGSMGGGQ LDMNRANLSP REGEQLLRSL SRQHLSELAA  1080
AGMGGVLDVG GALNSVGNQL TMLQSVEEGA MHAERGRQEA LATEQLHSHQ SVASMVASQR  1140
TQADLQQHSH VMGGLYREQD SLTQASLVGD SLGRDNEHPP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-24264321360Zinc finger protein JACKDAW
5b3h_F2e-24264321360Zinc finger protein JACKDAW
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I7H90.0A0A1Y1I7H9_KLENI; C2HC zinc fingers superfamily protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.15e-87indeterminate(ID)-domain 2