PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00094_0070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family RAV
Protein Properties Length: 790aa    MW: 86185.7 Da    PI: 6.2899
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00094_0070genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11296344155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV   +  g+W A+I+d      + r +lg+++ + +Aa+a+++a+ k++g
  kfl00094_0070 296 SQYRGVVAQP-HGKWGAQIYDK-----HVRLWLGTYDAEIDAARAHDRAAVKIKG 344
                    78****9999.8*********3.....5**********99**********99987 PP

2B391.46.6e-29416513196
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+k+ltpsdv+k++rlv+pk++ae++     ++++  ++tl++ede+g+ W+++++y+++s++yvltkGW++Fvk++gL  gD vvF+  + ++++
  kfl00094_0070 416 FEKALTPSDVGKLNRLVFPKHYAERFfpldlDQVS-VGQTLQFEDERGKFWRFRYSYWNSSQSYVLTKGWSRFVKEKGLLPGDNVVFE--KGHTGQ 508
                    99***************************975554.456*************************************************..336776 PP

                    .EEEE CS
             B3  92 lvvkv 96 
                    l+++ 
  kfl00094_0070 509 LYIGY 513
                    77765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-15296352IPR016177DNA-binding domain
PfamPF008478.0E-6296344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-19297352IPR001471AP2/ERF domain
SMARTSM003807.9E-25297358IPR001471AP2/ERF domain
PROSITE profilePS5103218.492297352IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-36410518IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-29413512IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-27414511No hitNo description
PROSITE profilePS5086315.439416517IPR003340B3 DNA binding domain
PfamPF023625.4E-26416512IPR003340B3 DNA binding domain
SMARTSM010192.2E-22416517IPR003340B3 DNA binding domain
SuperFamilySSF542776.28E-6714786No hitNo description
PROSITE profilePS5174512.386719790IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MFDSEGAAGI VPPREKPEPN GNGPMDQRER PKAAPPKGVV RSTFGMQIVN CVGAAYPKIE  60
ALPEETMLHL GQEKKTEALP GSSIRASLDA WRGRSTSARP GLEEEGKKGK AVPPLSWNMG  120
GKPAEGEWER GAESAKPVSI ALDSLSSHPA PFPEASGKCK MILKSGKFEI DEYRNTDGSG  180
RIRTLEVQHL KGKDAVAEPE NEPSSSAAGP QEDPGFENEA RAILKVEHLL ANQSPGLLTS  240
DQQAGEGSGR WSQEGGERGL EQGLERGFER GESLSRQEDG VGFALFREDS LKLFSSQYRG  300
VVAQPHGKWG AQIYDKHVRL WLGTYDAEID AARAHDRAAV KIKGNDAMTN FRPLTVADPE  360
GAFIAGVGRD QLVEMLRKHT FDEEMANSAR LGQLAARLES FQQPSLDGAQ KRQFLFEKAL  420
TPSDVGKLNR LVFPKHYAER FFPLDLDQVS VGQTLQFEDE RGKFWRFRYS YWNSSQSYVL  480
TKGWSRFVKE KGLLPGDNVV FEKGHTGQLY IGYARTQSGE GGPALPSPVP FGASPTQSSA  540
YEEKPCLPQR AWLHGSAPLG GSPGPPSSAP RLFGVTLTPS LGDSVPRQLL RTGSLPVKAS  600
LSPKRRFAAA FDGAPVNEGT ARQLASVRRV LSEGQTRLGG LLGGEDAEAR QPDERRLWGE  660
TLRNGFLEVG KRLEGQSAPG VLTPKVEEDV RPDGDGDGGV EGPGLGLRIG PPESEEEQRP  720
QVKCFVEESP YGVVVDLSQY KSTQQLKNAL LDATHGRLVV YQDKDGDMIL LGDEEWSFFL  780
KTVSRIFIRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-3941551913119DNA-binding protein RAV1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HZD70.0A0A1Y1HZD7_KLENI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-75related to ABI3/VP1 1