PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00032250-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 181aa    MW: 20173.6 Da    PI: 5.644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00032250-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.5e-191666155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a+  ++g
  WALNUT_00032250-RA 16 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAAFHFRG 66
                        67*****999.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-231675IPR016177DNA-binding domain
PfamPF008473.4E-121666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-321775IPR001471AP2/ERF domain
SMARTSM003801.6E-401780IPR001471AP2/ERF domain
PROSITE profilePS5103223.8281774IPR001471AP2/ERF domain
CDDcd000182.37E-231876No hitNo description
PRINTSPR003673.6E-101829IPR001471AP2/ERF domain
PRINTSPR003673.6E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGEPNISSST ISSASSSYRG VRKRKWGKWV SEIREPGKKT RIWLGSFETP EMAAAAYDVA  60
AFHFRGREAR LNFPELVNSL PRPASSDAED IRMTAHEAAL RLKGPASGRA HHHELVGGPS  120
LNVAPVTVRL SPSQIQTINE FPLDSPKMWM QMAVEDSIPA FSNEIEDNEW EDTQNDSLWD  180
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-191879668ATERF1
3gcc_A4e-191879668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219098.14e-82PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I24e-66ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLM5XFS13e-81M5XFS1_PRUPE; Uncharacterized protein
STRINGPOPTR_0013s10340.18e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-59ERF family protein