PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031124-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 208aa    MW: 22767.8 Da    PI: 8.6424
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031124-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1072.9e-3341136596
                 TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasecea 75 
                         k +++++hTkv+gRdRR+Rl+  caar+F+L++eLG+++d++tieWLl+qa+p+i++  g+                    +       +a
  WALNUT_00031124-RA  41 KAPSKDRHTKVNGRDRRIRLPPICAARVFQLTRELGYKTDGETIEWLLRQAQPSIIATIGStinggvassaatfgpsanttT-------DA 124
                         889**********************************************************998876554443222221110.......22 PP

                 TCP  76 esssssasnsssgkaaksaak 96 
                         +s+ s         +++s+++
  WALNUT_00031124-RA 125 VSNIS---------SCPSSTS 136
                         22222.........2222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-2944143IPR005333Transcription factor, TCP
PROSITE profilePS5136926.1194498IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MELEKINDLE MKLSSSSNNQ PTPNSQPIAP SASKAKLLPY KAPSKDRHTK VNGRDRRIRL  60
PPICAARVFQ LTRELGYKTD GETIEWLLRQ AQPSIIATIG STINGGVASS AATFGPSANT  120
TTDAVSNISS CPSSTSSKFP CVAETVHENR DHVVNKCAFR RPKAVLLPFE FGLVSNFDME  180
FSANEIAMLQ SVTDIEEGPK EKDLQKKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016815.11e-51Transcription factor-like protein
TrEMBLA0A061H0A31e-51A0A061H0A3_THECC; Transcription factor-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.13e-30TCP family protein