PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030891-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 745aa    MW: 81718.8 Da    PI: 6.2638
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030891-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07315335526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  WALNUT_00030891-RA 315 PCPDFRK-GACRRGDMCEYAHG 335
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-1654174IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-1794175IPR020683Ankyrin repeat-containing domain
CDDcd002042.23E-1594173No hitNo description
PROSITE profilePS5029718.16595203IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002595125IPR002110Ankyrin repeat
PfamPF127961.2E-995164IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.835130165IPR002110Ankyrin repeat
SMARTSM002480.0044130162IPR002110Ankyrin repeat
SMARTSM003564.0E-6310336IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5315335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582315337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4315337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4343373IPR000571Zinc finger, CCCH-type
SMARTSM0035646345368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MKCSANERMC CGSEWLKLRS FPTSNSIFID ESTPSSIDMN HLTIETEDTF ASLLELAANN  60
DIEGFKRSIE RDPSGIDEIG LWYGRKKGSK QMVNEHRTPL MVAATYGSID VMKLILSLSD  120
ADVNRPCGLD KSTALHCAAS GGAVNAVDAV NLLLASGADV NSVDANGHSP IDVIVVPPKF  180
QEAKLTLEQL LKPHGSDVER KLMVLTGTMS LNSPPLSSSP ENGSLSVSDF TSLTKMNFSD  240
LPIYSMSEKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN  300
ARRRDPRKFH YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTNCARR  360
VCFFAHTTEE LRPLYVSTGS AVPSPRSSTS GAAAMDFAAA MSLLPGSPSS VSVMSPSPFT  420
PPMSPSANGM SHAAWPQPNV PALHLPGSNL HSSRLRSSLN ARDIPTEDFD MLPDFDLQQQ  480
QLLNDLSCLS QPSMSSNSLN RSGRFKTLTP SNLDDLFSTE SSSPRFADQT LASAVFSPTH  540
KSAVLNQYQQ QQQQQSMLSP INTNFSPKNV DHHLLQASFG VPTSGRMSPR SVEPISPMGS  600
RVSMLAQREK QQQFRSLSSR ELGSNSASIV GSPANSWSKW GSSNGKLDWA VSTEELGKLR  660
RSSSFELGNN GEEPDLSWVQ SLVKESPTDI KDKLVTPVSD VAATPSEVSN MNSQTESVDH  720
AVLGAWLEQM HLEQMQLDHL VAQQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390GRKKGSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204626.10.0hypothetical protein PRUPE_ppa002189mg
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM5WGB70.0M5WGB7_PRUPE; Uncharacterized protein
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain