PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030406-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 362aa    MW: 39435.7 Da    PI: 6.6031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030406-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20181230255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  WALNUT_00030406-RA 181 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 230
                         59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.06E-34180240No hitNo description
SuperFamilySSF541712.42E-23181239IPR016177DNA-binding domain
SMARTSM003803.2E-38181244IPR001471AP2/ERF domain
PROSITE profilePS5103223.117181238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-32181239IPR001471AP2/ERF domain
PfamPF008472.5E-14182230IPR001471AP2/ERF domain
PRINTSPR003673.5E-11182193IPR001471AP2/ERF domain
PRINTSPR003673.5E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAATADLYSS GHLQSASYGG ELMEALEPFM KSASSSTIPC SSSATQYPSS PSSSPYVPST  60
SSTSSTSSAS DYDFNFLLSH SVPNQPGFYP DGCSTSTTPM FSDGISTQNL VGFEQPAPLG  120
LNQLTPSQIL QIQAQIHLQK QNSYPQHHSL PQQDGRGTLG LLGLKPIAMK HVGSPPKPTK  180
LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDRAAYKLRG DFARLNFPNL  240
RHQVDYQPLH SSVDAKLEAI CESLASSQKQ GKGEKRVRSS RKSRQAEAES VGEAESKSSE  300
SCRKVEISSS PLTTESDGSA GSSPLSDLTF ADSDEPQWDV ASENFLLQKY PSYEIDWASI  360
LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21180238160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811399.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E45e-91RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2I4DW740.0A0A2I4DW74_JUGRE; ethylene-responsive transcription factor RAP2-13-like
STRINGcassava4.1_010102m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-70related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]