PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028707-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 232aa    MW: 25837 Da    PI: 5.2724
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028707-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.65.9e-56811841101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+sfw++q   iekatdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  WALNUT_00028707-RA  81 QLQSFWANQyqeIEKATDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 171
                         89******99999****************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  WALNUT_00028707-RA 172 FDFLVDIVPREDL 184
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.04E-3374175IPR009072Histone-fold
PfamPF008081.3E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.2E-38104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDQQGHSQPT SVGVVGSGAQ LPYATDPYQT NQMTGAPSHG SVVTSVGAIQ STSQPAGAQL  60
PQHQLAYQHI HQQQQQQLQQ QLQSFWANQY QEIEKATDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGTIPGD EVQGCCMWEV VGCDSDDLVS TAVEVSVHQR KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-41671814119HapE
4g92_C2e-41671814119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626304.11e-118nuclear transcription factor Y protein
RefseqXP_008246497.11e-118PREDICTED: nuclear transcription factor Y subunit C-3
SwissprotQ8L4B22e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLI3TAX91e-118I3TAX9_MEDTR; Nuclear transcription factor Y subunit C2
TrEMBLG7KYQ41e-118G7KYQ4_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA03G39911.11e-111(Glycine max)
STRINGVIT_14s0128g00250.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.47e-79nuclear factor Y, subunit C9