PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028339-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 163aa    MW: 18327.7 Da    PI: 7.5004
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028339-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.6e-4051061101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +CaaCk+lrr+C++dC+++pyfp +++++fa+vh+++Gasnv k+l+++p ++ r +a+++l++eA+ r++dPvyG+vg+i++l+qq++++
  WALNUT_00028339-RA   5 RCAACKYLRRRCPSDCIFSPYFPPNDHQRFACVHRIYGASNVGKMLQQIPSHDlRAKAADTLYFEAKYRIQDPVYGCVGMITQLHQQIHNA 95 
                         6*************************************************9999************************************* PP

              DUF260  91 kaelallkeel 101
                         ++ela++++++
  WALNUT_00028339-RA  96 ESELAKTQAQI 106
                         *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.5764106IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-395103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MISGRCAACK YLRRRCPSDC IFSPYFPPND HQRFACVHRI YGASNVGKML QQIPSHDLRA  60
KAADTLYFEA KYRIQDPVYG CVGMITQLHQ QIHNAESELA KTQAQIAFLN SNDHAQESQV  120
QNIETKLHPD SNILILPEQI NAAGGLWSYV PASATSTDQT SWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3469912104LOB family transfactor Ramosa2.1
5ly0_B2e-3469912104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820739.11e-122PREDICTED: LOB domain-containing protein 24-like
SwissprotP594682e-50LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2I4EMW21e-120A0A2I4EMW2_JUGRE; LOB domain-containing protein 24-like
STRINGPOPTR_0012s13910.11e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.19e-53LOB domain-containing protein 24