PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028337-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 343aa    MW: 37620.7 Da    PI: 6.7297
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028337-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081152174123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  WALNUT_00028337-RA 152 YECKTCNRTFPSFQALGGHRASH 174
                         99**********99999998887 PP

2zf-C2H213.10.00029231253123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  WALNUT_00028337-RA 231 HECSICGAEFTSGQALGGHMRRH 253
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-13151176IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-9151174No hitNo description
PROSITE profilePS5015710.637152179IPR007087Zinc finger, C2H2
SMARTSM003550.052152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-9226253No hitNo description
PfamPF139125.1E-13230255IPR007087Zinc finger, C2H2
SMARTSM003550.01231253IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723231253IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEAAQEEAIL RSKENNTHVV IKGKRTKRQR PQSPIPLIPS ITANSTSHVD PDGEGCGGGG  60
GCDGGDQSND IANDNMTSFS PATSAEILQE STEEEEDMAN CLILLAQGQS RESPKQVEED  120
HADGGGGVYK FNSRRFLEAA ATGTGKAGYY VYECKTCNRT FPSFQALGGH RASHKKPKAA  180
AMSAEEKSSK QFLLSSDEEE AQFKKNDHLS SIFFQSSSRG LCGNNRSNKV HECSICGAEF  240
TSGQALGGHM RRHRAPITGN KFNTTLTFTP PPMAPLEPDQ EPKKPRRTVI SLDLDLNLPA  300
PEDDHREPKF PFATKQQQQQ QQQQKQQQPP IVFSARTLVD CHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808473.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2I4DMV70.0A0A2I4DMV7_JUGRE; zinc finger protein ZAT5-like
STRINGEOY188511e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-64C2H2 family protein