PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028244-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 383aa    MW: 42956.6 Da    PI: 4.4143
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028244-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34421322101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++e++ed+++++++sws+  nsfvv+d+ +f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++
  WALNUT_00028244-RA  42 FLTKTFEMVEDPSTDSIVSWSRGRNSFVVWDSGKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRH 123
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++ikr++
  WALNUT_00028244-RA 124 LLKTIKRRR 132
                         *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3438131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6038131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3042131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEGVMVKEET VTCALGSSSS SSSSSFSPQP MEGLHDVGPP PFLTKTFEMV EDPSTDSIVS  60
WSRGRNSFVV WDSGKFSTTL LPRYFKHSNF SSFIRQLNTY GFRKVDPDRW EFANEGFLGG  120
QRHLLKTIKR RRHVGQGLQQ EGGGGGGACV ELGEYGLEGD LERLRRDRSW LMAEILKLRQ  180
EQQNSRDEII SMEDRLQATE RKQQQMMTFL AKALSNPTFI QQFAQRRELG GVEIGRKRRL  240
TARPSAEDLQ EEVFSVTAGS GLDVDHTSQE HEELSTMESE IETFLLSSWD NESSSDIKDP  300
IASSIPARSG GNLDFVNETI WEELLNGDMI AGNAEEEAVV DYQSEIDAEI LEDLVAQPAN  360
WGEDLQDLVD QMGDLRSKTR PNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-26401318110Heat shock factor protein 1
5hdn_A2e-26401318110Heat shock factor protein 1
5hdn_B2e-26401318110Heat shock factor protein 1
5hdn_C2e-26401318110Heat shock factor protein 1
5hdn_D2e-26401318110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKTIKRR
2162167RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858526.10.0PREDICTED: heat shock factor protein HSF30 isoform X3
SwissprotP411521e-136HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2I4HQU70.0A0A2I4HQU7_JUGRE; heat shock factor protein HSF30 isoform X3
STRINGEOY299280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-104heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]