PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027862-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 275aa    MW: 30717.8 Da    PI: 8.3201
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027862-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.8e-19130184256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  WALNUT_00027862-RA 130 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 184
                         788899***********************************************98 PP

2HD-ZIP_I/II125.32.7e-40130219191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  WALNUT_00027862-RA 130 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 219
                         69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.0E-59101IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.608.5E-18117180IPR009057Homeodomain-like
SuperFamilySSF466895.43E-19119187IPR009057Homeodomain-like
PROSITE profilePS5007117.589126186IPR001356Homeobox domain
SMARTSM003891.0E-15128190IPR001356Homeobox domain
PfamPF000463.0E-16130184IPR001356Homeobox domain
CDDcd000864.23E-17130187No hitNo description
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
SMARTSM003402.0E-25186229IPR003106Leucine zipper, homeobox-associated
PfamPF021835.2E-10186220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGFDDVCNTG LVLGLGLTAS QEINTPPSRA EVVPKKPACS NFTTPNNFEL SLTLGLSGES  60
YINQVPKKID VNKGCEESVD LYRQASPHSA VSSFSSGRVK RERDLSSEEV EAERVSSRVS  120
DEDEDGPNAR KKLRLTKEQS ALLEESFKQH STLNPKQKQA LARQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEFLKKCCE TLTDENRRLQ KELQELKALK LAQPLYMHMP AATLTMCPSC  240
ERIGGVGENV GSKSPFSMAP KPHFYNPFNN PSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857289.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-106HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2I4HM960.0A0A2I4HM96_JUGRE; homeobox-leucine zipper protein HAT22-like
STRINGEOX917921e-153(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-84HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]