PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025120-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 309aa    MW: 34646.8 Da    PI: 8.8951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025120-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012180202123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k F++   L  H  +H
  WALNUT_00025120-RA 180 FKCQTCKKAFPSYQALGGHRANH 202
                         89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-5427IPR007087Zinc finger, C2H2
SMARTSM003555.4527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221180207IPR007087Zinc finger, C2H2
PfamPF139121.2E-11180204IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-7180202No hitNo description
SMARTSM003550.18180202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-7234261No hitNo description
PfamPF139122.2E-7239261IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743239261IPR007087Zinc finger, C2H2
SMARTSM003550.34239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEKHRICKIC TKRLANGKAM GGHMRSHFAK LPIPPTVQQH DNSFAAESTL LSPSQSSSSS  60
LNFSSPMQSY RSLNRDVLSL VPNSDKESDA DSQPMNPTRR ISKRRRETFA PLVKSPLEPE  120
LVSSVSDTFS EEDVAMCLLM LSRGKWPRTS KEEVQHEGKD IGDDHSLRLN HTRTRPRTKF  180
KCQTCKKAFP SYQALGGHRA NHKKTKNQLR EEDLEDGKDG GTARGRSRTG HGRFEQRIFE  240
CEFCFKVFES GQALGGHKKV HFSNLGNARS SSVVRFGDNI IDLNQPAQME EDDEASQLVD  300
LISTVSDAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840099.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2I4G8760.0A0A2I4G876_JUGRE; zinc finger protein ZAT4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-41C2H2-like zinc finger protein