PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025046-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 362aa    MW: 40711.7 Da    PI: 7.7929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025046-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.84.4e-11103156255
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                         ++lL  cA a+++g++++ q+lL  l+elas +gd+++Rla++ ++ALa+++  
  WALNUT_00025046-RA 103 EQLLNPCAAAITEGNMSRLQHLLYVLQELASHTGDSNRRLAFHGLRALAQHIRT 156
                         689***********************************************9986 PP

2GRAS82.95.5e-26166358128320
                GRAS 128 LlqaLasRpegppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlq 209
                         Ll  La+ +  p  +RiT++++ +++               ++ +rL  fA++++v++++n l  + l++l  ++++++p+ +l+V+ +++
  WALNUT_00025046-RA 166 LLSRLAK-STYPSLVRITVIANTDENdqnketpfsVGPPGDNVSSRLLCFAKSMNVNLQINRLNNHPLQSLGAQAINTSPDGTLIVCAQFR 255
                         6777776.466789*******987778777776666667799********************9999************************* PP

                GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                         l +l    +++++er+e+L+++++++Pk v+++e+   +++ n ++F+++f++ ++y + ++ds+++ +    + r + Er+l++ e+ ++
  WALNUT_00025046-RA 256 LRHLN---HNSPDERTEFLRVLRGMEPKGVILSENStdCSCkNCGNFATGFSRRVDYLWRFLDSTSSAF----KGRESEERRLMEGEAAKA 339
                         ****8...66666788******************98335558889********************7775....666666777777778777 PP

                GRAS 298 vacegaerrerhetlekWrerle 320
                         +++    rre +e +ekW er++
  WALNUT_00025046-RA 340 LTN----RREMNEGKEKWCERMR 358
                         766....55569**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.1691362IPR005202Transcription factor GRAS
PfamPF035141.5E-8103156IPR005202Transcription factor GRAS
PfamPF035141.9E-23166358IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MRDINGYQWW DESPEVGQDL FDYSAIAAAT CTVPTNPTVF NHPSPANSSK KRKASDNILS  60
KQSVNYLSPQ KNQSQRITNA DIGFAEVEEL RSPLEDKEGR WAEQLLNPCA AAITEGNMSR  120
LQHLLYVLQE LASHTGDSNR RLAFHGLRAL AQHIRTTHIP HLDLLLLSRL AKSTYPSLVR  180
ITVIANTDEN DQNKETPFSV GPPGDNVSSR LLCFAKSMNV NLQINRLNNH PLQSLGAQAI  240
NTSPDGTLIV CAQFRLRHLN HNSPDERTEF LRVLRGMEPK GVILSENSTD CSCKNCGNFA  300
TGFSRRVDYL WRFLDSTSSA FKGRESEERR LMEGEAAKAL TNRREMNEGK EKWCERMRGV  360
ES
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021679928.11e-130nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC84e-93NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2C9W2L41e-127A0A2C9W2L4_MANES; Uncharacterized protein
STRINGcassava4.1_033587m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-60GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]