PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024281-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YC
Protein Properties Length: 234aa    MW: 26282.8 Da    PI: 6.7041
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024281-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.66e-56491521101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+sfw++q   iekatdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  WALNUT_00024281-RA  49 QLQSFWANQyqeIEKATDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 139
                         89******99999****************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  WALNUT_00024281-RA 140 FDFLVDIVPREDL 152
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.05E-3342143IPR009072Histone-fold
PfamPF008081.3E-2171134IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.3E-3872149IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTGAPSHGSV VTSVGAIQST SQPAGAQLPQ HQLAYQHIHQ QQQQQLQQQL QSFWANQYQE  60
IEKATDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN  120
KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTIPVGGH ADALPYCYMP  180
PHHAPHHAPQ VGTPGMIMGK PVMDPAMYAQ QSHPYMVPQM WPQASEQQQS PSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-41351494119HapE
4g92_C2e-41351494119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875193.11e-141PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875194.11e-141PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875195.11e-141PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B21e-86NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLQ2HTM11e-136Q2HTM1_MEDTR; Histone-fold/TFIID-TAF/NF-Y
STRINGGLYMA19G42460.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-83nuclear factor Y, subunit C9