PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024034-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 99aa    MW: 11467.2 Da    PI: 10.8669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024034-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.4e-211363256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+t eeAa a+++a+ kl+ge
  WALNUT_00024034-RA 13 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTVEEAALAYDKAAYKLRGE 63
                        59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-301272No hitNo description
PROSITE profilePS5103222.7611370IPR001471AP2/ERF domain
SMARTSM003801.4E-351376IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-241371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-321371IPR001471AP2/ERF domain
PRINTSPR003672.0E-111425IPR001471AP2/ERF domain
PfamPF008471.2E-151463IPR001471AP2/ERF domain
PRINTSPR003672.0E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MKRVGTPQKP AKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTVEEAA LAYDKAAYKL  60
RGEFSRLNFP HLKHQGAHIS GEFGDYKPLH SSVDAKLHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-211276469ATERF1
3gcc_A2e-211276469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845398.14e-67PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E43e-55RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2I4GNC69e-66A0A2I4GNC6_JUGRE; ethylene-responsive transcription factor RAP2-4-like
STRINGEOX921517e-62(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-45related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]