PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024034-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 99aa    MW: 11467.2 Da    PI: 10.8669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024034-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.4e-211363256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+t eeAa a+++a+ kl+ge
  WALNUT_00024034-RA 13 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTVEEAALAYDKAAYKLRGE 63
                        59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-301272No hitNo description
PROSITE profilePS5103222.7611370IPR001471AP2/ERF domain
SMARTSM003801.4E-351376IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-241371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-321371IPR001471AP2/ERF domain
PRINTSPR003672.0E-111425IPR001471AP2/ERF domain
PfamPF008471.2E-151463IPR001471AP2/ERF domain
PRINTSPR003672.0E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MKRVGTPQKP AKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTVEEAA LAYDKAAYKL  60
RGEFSRLNFP HLKHQGAHIS GEFGDYKPLH SSVDAKLHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-211276469ATERF1
2gcc_A1e-211276469ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047994.11e-62AP2/ERF domain-containing transcription factor, putative
SwissprotQ8H1E42e-56RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A061DJP41e-62A0A061DJP4_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGVIT_00s0662g00040.t015e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-45related to AP2 4