PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023836-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 323aa    MW: 35858.1 Da    PI: 6.3257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023836-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048255277123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k+F +   L  H r+H
  WALNUT_00023836-RA 255 FECPFCDKVFGSGQALGGHKRSH 277
                         89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-5327IPR007087Zinc finger, C2H2
SMARTSM003550.27426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035556219239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.74E-8219277No hitNo description
PfamPF139124.9E-6219244IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808219247IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4250277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.015255277IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055255277IPR007087Zinc finger, C2H2
PfamPF139122.1E-11255277IPR007087Zinc finger, C2H2
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MERHRCKLCF RTFANGRALG GHMKAHLTTL PLPPKPLQLV ESHTESASSS SSSSGEEQEE  60
DEQSLRDAEE KALAYGLREN PKKSFRLADP EFSFAVDAGS VVQDRESETE SKNPTRQRSK  120
RNRKPSVAEN QGENLELKKP KLRIPSLVDS PEPLSSVSDT SPEEDVAMCL MMLSRGIWMG  180
NNEEQDQEQG KQVQRSVQVK VQEPEELEEI KIRKVRGKHC CEKCKKRFRS YQALSSHKRI  240
CYRDEAGNDS NERIFECPFC DKVFGSGQAL GGHKRSHLLG SSTAAAATAN AAAASPLKLE  300
STVIDLNLPA PVEEDDFSVV SDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120RQRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018859922.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2I4HUX40.0A0A2I4HUX4_JUGRE; zinc finger protein ZAT4-like
STRINGcassava4.1_011850m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-42C2H2-like zinc finger protein