PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023600-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 725aa    MW: 79533.1 Da    PI: 7.708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023600-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97e-08315335526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC+ Gd C +aHg
  WALNUT_00023600-RA 315 PCPEFRK-GTCQKGDACEYAHG 335
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.21E-1371225IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.9E-1575226IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.681117226IPR020683Ankyrin repeat-containing domain
SMARTSM002482.0E-4117147IPR002110Ankyrin repeat
CDDcd002042.07E-12117226No hitNo description
PROSITE profilePS500888.79117141IPR002110Ankyrin repeat
PfamPF136372.6E-7119169No hitNo description
SMARTSM002483.3152184IPR002110Ankyrin repeat
SMARTSM003563.3E-5310336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366310337IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5315335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4315336IPR000571Zinc finger, CCCH-type
SMARTSM0035658345368IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.296345369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MMNKVLVLMV PENLWGLSFW TKAVAILILG WVVWTGYLCL DMCSGSNSRL SSSSFGMEGE  60
FQKQNDGFFC DCSVLLELSA MDDLEAFRSE VEEKGLDVNE ASFWYGRRIG SKKMAFEKRT  120
PLMIAAMFGS VKVLKYMIET GKVDVNRVCG SDRVTALHCA VAGGTNTSVG IIKRLLDACA  180
DATCVNANGN KPVDLIGPAS RSPSNSNRKA IELLLKGDVS IGESDQITTE EEDRQKIATP  240
QLSKEGTEKK EYPIDVSLPD INNGIYGTDE FRMYTFKVKP CSRAYSHDWT ECPFVHPGEN  300
ARRRDPRKYP YSCVPCPEFR KGTCQKGDAC EYAHGVFESW LHPAQYRTRI CKDETGCARK  360
VCFFAHKAEE LRPVYASTGS AMPSPKSHSA GGLDMTVMSP LALSSSSMPM PATSTPPMSP  420
QAAASSPKSG SLWQNKLNLT PPALQLPGSR LKTALSARDL DLEMELLGLE SHASQQQQLI  480
DEITRLSSPS PSYWNKEFNR MGDLKPSNLD DIFGSLDSSM LSQLQGLSLK PTTPTQLQSP  540
NGLQMRQNMN QLRASYPTNL SSSSARKPSS FGFDSSAAVA AAVMNSRSAS FAKRSQSFVD  600
RGAAGTHRPG LTSAGNSASM MPSTRSDWSS PDGKLDWGIQ GDELNKLKKS ASFRFRDNNV  660
AKTTLMQSGV NEPDVCWVNS LVKDVSHERS GHFGTKKAQY NHGNGGEILP PWLEQLYIEQ  720
EQMVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233766.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLM5XIS20.0M5XIS2_PRUPE; Uncharacterized protein
STRINGGLYMA14G01990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein