PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023269-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 269aa    MW: 30085.9 Da    PI: 8.9285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023269-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-173383155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s++ GVr+++ +g+WvAeI+d       +  r +lg+f +ae+Aa+a+++a+  l+g
  WALNUT_00023269-RA 33 SKFVGVRQRP-SGKWVAEIKDtT-----HkIRMWLGTFESAEQAARAYDEAAFLLRG 83
                        79********.7*********33.....35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-123383IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-193392IPR016177DNA-binding domain
CDDcd000183.95E-313393No hitNo description
SMARTSM003801.1E-343497IPR001471AP2/ERF domain
PROSITE profilePS5103220.0733491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-273491IPR001471AP2/ERF domain
PRINTSPR003673.1E-73546IPR001471AP2/ERF domain
PRINTSPR003673.1E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEHLLRKQQK GVSANMQSKY KERTTNNNFI SKSKFVGVRQ RPSGKWVAEI KDTTHKIRMW  60
LGTFESAEQA ARAYDEAAFL LRGSNTRTNF ATHISPDSPI SLKIKNLLHQ KKTSKQHPSA  120
VPTVKPASTR ITPTCCLTNF STKQSASSSG KDQGPLMVGD VYRPELSNCV AGVEAGKFHS  180
DHSWTSQSPT GSDQLPLLQD RLEFPKHGVN NLMPADTTYV ELTEFERMKV ERQISASLYE  240
MNGVNDYAYD DASDPLWDLS ALCHLFCPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-153594363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582636.11e-89PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLB9T1F08e-88B9T1F0_RICCO; DNA binding protein, putative
STRINGPOPTR_0003s21090.11e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-49related to AP2 11