PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023232-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 400aa    MW: 45729.9 Da    PI: 8.9734
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023232-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.5e-133771797
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                        ++p +fa+++  +   s   tl  ++g +W+v l  ++ ++++++ +GW++Fv+   +++g f++F+++g+s+f  +v+++
  WALNUT_00023232-RA  3 RIPENFANKFRDE--FSAFATLSIPDGHVWQVGL--KRIGNSVWFHNGWQKFVERYSIRVGYFLIFRYEGNSRF--FVHIY 77
                        699****999644..777899999**********..9*********************************9999..88886 PP

2B355.51e-17286373495
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W v++    k+gr  l++GW eF  +n+L egD++vF++ ++++  l+
  WALNUT_00023232-RA 286 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQVSDGRQWPVRC--LYKGGRAKLSQGWYEFSLENNLGEGDVCVFEMLRTRDIVLK 371
                         78899******************866743...59**************..66666778***********************8877666566 PP

                         EE CS
                  B3  94 vk 95 
                         v+
  WALNUT_00023232-RA 372 VT 373
                         65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.719180IPR003340B3 DNA binding domain
SMARTSM010192.5E-5180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-17278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-15378No hitNo description
PfamPF023626.3E-11377IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-19378IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-23275376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-23276376IPR015300DNA-binding pseudobarrel domain
CDDcd100177.12E-22281376No hitNo description
SMARTSM010191.6E-16283378IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014283376IPR003340B3 DNA binding domain
PfamPF023626.3E-16286372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MQRIPENFAN KFRDEFSAFA TLSIPDGHVW QVGLKRIGNS VWFHNGWQKF VERYSIRVGY  60
FLIFRYEGNS RFFVHIYNLA ASEISYQSNA LGGTHGLIYG NQYNVFEEME DDDSAAIMGS  120
SLPCLTSGPL KNKLLGECGD QLTPSRSYTP PSLQNLFNGS QLKNCLNWAG ERNLHPSKGF  180
RKSPAETEPT RNVGVQFNAI EFKKSLDEVK FQSPDQETQI KKTMRKKRKP DPNEQESSAQ  240
HEEVEMRFRF YESASARKRT VTAEERERAI NAAKAFEPAN PFCRVVLRPS YLYRGCIMYL  300
PSCFAEKNLS GVSGFIKLQV SDGRQWPVRC LYKGGRAKLS QGWYEFSLEN NLGEGDVCVF  360
EMLRTRDIVL KVTPFRVLDD TGLVVNHQLQ QNVGQTKFII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-7424937715142B3 domain-containing transcription factor VRN1
4i1k_B1e-7424937715142B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807979.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
SwissprotQ8L3W11e-124VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A2I4DLF20.0A0A2I4DLF2_JUGRE; B3 domain-containing transcription factor VRN1-like isoform X2
STRINGXP_010096266.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-126B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]