PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023086-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 728aa    MW: 79625.9 Da    PI: 7.1094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023086-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08305325526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC++Gd C +aHg
  WALNUT_00023086-RA 305 PCPEFRK-GTCRRGDLCEYAHG 325
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029717.23784159IPR020683Ankyrin repeat-containing domain
PfamPF127965.6E-1084153IPR020683Ankyrin repeat-containing domain
CDDcd002045.68E-884159No hitNo description
PROSITE profilePS500888.52384105IPR002110Ankyrin repeat
SMARTSM002480.005284114IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.6E-1784164IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-1584163IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0065119151IPR002110Ankyrin repeat
PROSITE profilePS5008811.194119154IPR002110Ankyrin repeat
SMARTSM003562.2E-5300326IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6305325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896305327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MCAGPEHLNL QLAPPPSSES RSLTKAMNNP IGTVKSELSF SILLELAADN DVEGFKKSIC  60
NDSVITETGL WYGRQEFLKS MVLEHRTPLM VAAKYGSVDV VKLILALPEA DVNLSSRADK  120
STALHCAASG GSVGAVVVVK LLLCAGAEPN VTDAYGRRPC DVIVAPPKLS NLKFALEELL  180
RNDYPACQED PHVSTVDLRS DSTPLPASPE KGSIFVSNSI LSPVNCKPNG ANVGSLPEKK  240
EYPIDPSLPD LKSSIYATDE FRMFSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPKKYH  300
YSCVPCPEFR KGTCRRGDLC EYAHGVFECW LHPAQYRTRL CKDGMSCMRR VCFFAHKHEE  360
LRLLYASSGS ALPSPRSATS AATVMDMAAA LNMFPSSPSV GSAMSLSPFS PSLSPSGNGV  420
SQMSMAWPQQ NIPTLHLPGS NLQMSRLRSS LNARDISAEL RFSQDFEMQH QPFLNDFSRS  480
SQAHISISPR NLSFHSKTLS PSNLDELFSA EVSSPRYSDQ HAASAVFSPS HKSALNQFQQ  540
QQNSMLSPIK TNVLPAQNID HPHLQASFGV SSPGMISPWS IDPLSPMGSR VSAFSHLEKH  600
QLQLRSFSSR DLGSNLPCDL GSNSLVGSPR HSWSKWESHN GKVDWSVQGD ELAGLRKSCS  660
IGRNREKPDV SWVQSLVKEL PSENTENALV SGTALSVEGS DSKHQTESSD QTVSGPWLEQ  720
LQIDQIAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632114.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_010651227.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLF6GU430.0F6GU43_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g02160.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain