PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022832-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 139aa    MW: 15355.8 Da    PI: 7.8322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022832-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-201868255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g
  WALNUT_00022832-RA 18 KYRGVRRRP-WGKFAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYAMRG 68
                        8********.**********4...3234*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-341882IPR001471AP2/ERF domain
CDDcd000185.06E-181877No hitNo description
PROSITE profilePS5103223.8021876IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-231877IPR016177DNA-binding domain
PfamPF008477.3E-161868IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-321878IPR001471AP2/ERF domain
PRINTSPR003679.3E-121930IPR001471AP2/ERF domain
PRINTSPR003679.3E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDEDPQRGGA KEGGDHVKYR GVRRRPWGKF AAEIRDSNRH GARVWLGTFN TAEEAARAYD  60
RAAYAMRGSL AILNFPNEYA LGSGGASASS SSPSSSRRTG NAEERTGSSG HGQHVFEFEY  120
LDDKVMEELL ESEEKKNKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-4171383127Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814229.13e-98PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC59e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2I4E4968e-97A0A2I4E496_JUGRE; ethylene-responsive transcription factor ERF096-like
STRINGXP_010039174.14e-47(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.14e-27Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]