PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022647-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 202aa    MW: 21895.8 Da    PI: 8.1674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022647-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.89.8e-4091091100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeAe r+rdPvyG+vg+i++lqqq+ +l
  WALNUT_00022647-RA   9 PCGACKFLRRKCINGCVFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEAESRIRDPVYGCVGHIFTLQQQVVNL 99 
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela ++++
  WALNUT_00022647-RA 100 QAELAFVQAR 109
                         *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1028110IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-389107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSASNGGGPC GACKFLRRKC INGCVFAPYF DSDQGTAHFA AVHKVFGASN ASKLLLRIPA  60
HKRLDAVVTL CYEAESRIRD PVYGCVGHIF TLQQQVVNLQ AELAFVQARL ATLHRLPPPH  120
SQSPSPTNHH SSSDLGSTSD LQSNSNSAMH FDPLHPHPIP TELTSFLNSL DGDLEAGTVQ  180
VLAREIISRY LPGVRFRPSS PN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052037.11e-103LOB domain-containing protein 31
SwissprotO813222e-75LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A061DTV81e-103A0A061DTV8_THECC; LOB domain-containing protein 31
STRINGPOPTR_0014s06580.12e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.19e-77LOB domain-containing protein 31