PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021715-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 724aa    MW: 78960.6 Da    PI: 6.1427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021715-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07309329526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  WALNUT_00021715-RA 309 PCPDFRK-GACRRGDMCEYAHG 329
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.8E-1083156IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-1686167IPR020683Ankyrin repeat-containing domain
CDDcd002041.43E-1487166No hitNo description
Gene3DG3DSA:1.25.40.207.5E-1788169IPR020683Ankyrin repeat-containing domain
SMARTSM002480.004188118IPR002110Ankyrin repeat
PROSITE profilePS5029718.24588196IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001123155IPR002110Ankyrin repeat
PROSITE profilePS5008811.541123158IPR002110Ankyrin repeat
SMARTSM003564.0E-6304330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4309331IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035642339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MCCVSEWLKF SLSPTLASIS IDESRPSNID MMNHLTVETE DAFASLLELA ANNDIEGFKR  60
SIECDPSGID EIGLWYGRKK GSKQMVYEHR TPLMVAATYG SIDVMKLILS LSEADINRSC  120
GLDKSTALHC AASGGAVNAV DAVKLLLASG ADPNLIDANG HCPIDVIVVP PKLQDVKLTL  180
VELLKTDGSN VEHKLTIVTG TLSSSSPPLS SSPENGSPST ADFTSSPTKV NFSDLPVSSV  240
SEKKEYPVDP SLPDIKNSIY STDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRICKDGTN CARRVCFFAH  360
TAEELRPLYV STGSAVPSPR SSTSGATAMD FAAAMNLLPG SPSPFTPPMS PSANGMSHSA  420
WPQPNVPALH LPGSNVQSSR LRSSLNARDI PAEDFDMFPD FDLQQQQLLN EFSCFSQPSM  480
SSNSLNRSGR FKTLTPSNLD DLFSAESSSP RYTDQALASA VFSPTHKSAV LNQFQQQSML  540
SPINTNYSPK NVDHHLLQSS FAVPTSGRMS PRSVEPISPM SSRVSMLAQR EKQQQFRSLS  600
SRELGSNSAS IVGSPVNSWS KWGSSNGKLD WAVSTDELGK LRRSSSFEFG NNGEEPDLSW  660
VQSLVKESPT DIKEKLATPV SDVAATASAG EGPTMTSQIE SVDHAVLGAW LEQMKLDHLV  720
AQQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683GRKKGSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092985.10.0Zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLW9QSN90.0W9QSN9_9R
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain