PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021648-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 314aa    MW: 34660.6 Da    PI: 4.7638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021648-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1871121155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr p+   k kr +lg+f  a eAa a+++a+k+++g
  WALNUT_00021648-RA  71 CDYRGVRQRT-WGKWVAEIRQPN---KGKRLWLGTFANAVEAAFAYDEAAKAMYG 121
                         68*****999.**********93...25************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-1271121IPR001471AP2/ERF domain
CDDcd000185.17E-3171129No hitNo description
PROSITE profilePS5103221.10172129IPR001471AP2/ERF domain
SMARTSM003803.4E-3372139IPR001471AP2/ERF domain
PRINTSPR003671.3E-87384IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2173129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3073129IPR001471AP2/ERF domain
PRINTSPR003671.3E-895111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAVSSDVTIT RKGKSRTGRD GCLSVAETLS KWKEQTVQLD SCNDKPIRRA PAIGSKKGCM  60
KGKGGPENSR CDYRGVRQRT WGKWVAEIRQ PNKGKRLWLG TFANAVEAAF AYDEAAKAMY  120
GSRARLNFPG CCSVTTSSGT CDSTTTFNHS GVCAAEEIDV KPLIPNLRNE SGEVESRMCT  180
RLDAVVEADM PNRMSQSEAK DEPCNIKPGF TDIPNFYWED GQDYSARPEA KDDLHDIKQE  240
ASGVGNCYWD GGHDYSMDEM CDLDELRGLL DDIPLCNMES ILGLGFDDGQ LGSSTAAPER  300
NQYWGQPVDL PYQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1873129360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811226.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A2I4DVQ20.0A0A2I4DVQ2_JUGRE; dehydration-responsive element-binding protein 2A-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-29DRE-binding protein 2A