PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021384-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 177aa    MW: 20477.8 Da    PI: 4.3758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021384-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.18e-11958149
                 NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk 49
                        lppGfrF Ptdeelv ++L +k++       ++i+++d++ +++Pwd++ 
  WALNUT_00021384-RA  9 LPPGFRFCPTDEELVLHFLFHKASLLLPCHPSIIPDLDLClQYDPWDFNG 58
                        79********************99887555589****987478****973 PP

2NAM48.92.1e-156111773128
                 NAM  73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +nr+tk+gyWk   +d++vl++ ++++vg+k+ +vf  g+ap g +t+W+m+ey+l
  WALNUT_00021384-RA  61 TENRVTKNGYWKDLDTDETVLTSgEKKVVGIKRYFVFCIGQAPAGFETSWIMQEYHL 117
                         579******************9967778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-357132IPR003441NAC domain
PROSITE profilePS5100525.529134IPR003441NAC domain
PfamPF023653.2E-1710117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGDNMSGNLP PGFRFCPTDE ELVLHFLFHK ASLLLPCHPS IIPDLDLCLQ YDPWDFNGMV  60
TENRVTKNGY WKDLDTDETV LTSGEKKVVG IKRYFVFCIG QAPAGFETSW IMQEYHLYNH  120
RDSGKWVLCR VHEREQGNFG DHHYYSDNED NRTELSSPDE VCLSIMDDDL DDQMSFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-24813516166NO APICAL MERISTEM PROTEIN
1ut4_B1e-24813516166NO APICAL MERISTEM PROTEIN
1ut7_A1e-24813516166NO APICAL MERISTEM PROTEIN
1ut7_B1e-24813516166NO APICAL MERISTEM PROTEIN
3swm_A2e-24813519169NAC domain-containing protein 19
3swm_B2e-24813519169NAC domain-containing protein 19
3swm_C2e-24813519169NAC domain-containing protein 19
3swm_D2e-24813519169NAC domain-containing protein 19
3swp_A2e-24813519169NAC domain-containing protein 19
3swp_B2e-24813519169NAC domain-containing protein 19
3swp_C2e-24813519169NAC domain-containing protein 19
3swp_D2e-24813519169NAC domain-containing protein 19
4dul_A1e-24813516166NAC domain-containing protein 19
4dul_B1e-24813516166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839040.11e-128PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK64e-41NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2I4G5871e-126A0A2I4G587_JUGRE; NAC domain-containing protein 104-like
STRINGXP_010090830.16e-50(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-43xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]