PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020613-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 519aa    MW: 59136.3 Da    PI: 8.2766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020613-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-1874131255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr++  +g+WvAeIr p  ng     +r  r +lg+f+ta +Aa a+++a+++++g
  WALNUT_00020613-RA  74 KYRGVRQRT-WGKWVAEIRQPL-NGtyvpsRRgSRLWLGTFDTAVQAALAYDEAARAMYG 131
                         7*****999.**********84.5569997557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-1974140IPR016177DNA-binding domain
SMARTSM003806.6E-3574145IPR001471AP2/ERF domain
PfamPF008478.8E-1374131IPR001471AP2/ERF domain
PROSITE profilePS5103222.06274139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2974140IPR001471AP2/ERF domain
CDDcd000182.10E-2974141No hitNo description
PRINTSPR003671.1E-97586IPR001471AP2/ERF domain
PRINTSPR003671.1E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAHYALKSNY RQRRSRKRRT ECDSIEETLA KWKKLNDELD AGKDGVDVIR KVPAKGSRKG  60
CMRGKGGPEN THFKYRGVRQ RTWGKWVAEI RQPLNGTYVP SRRGSRLWLG TFDTAVQAAL  120
AYDEAARAMY GPLSRLNFPE QIAESVFSDT SKTSPTEFEA SLDNSEVGEV KESMINQLST  180
VSRLNYSEVA DEESNEQQGC SKVCVFEEPM KLNPKRYQYC VFHNVEEKPD FSKDYFPQKV  240
QKLDAHLPSS SSSNRMRVLH LKEKLDCSKD YFPHQLQNLD ADLPGSSNQI QELHLKEKPD  300
CSEDYFPHQL QSPDAYLPGN SNHMRELHLD ADGSCDFGLL EQCGRSYLKG SVNLDSLRPD  360
YDFCLVEEKK FLDSIITFYD PDGTQKSKPD GRNFGTQNMN HISVSCFNSD QTIFHGPLLV  420
PNLGEFYRKS YSYNTQGHEE KQTHPDSSKT KYWSSHKIPD QAIFRTSTSV VNKLENAPNP  480
RNKMTANTIP VPKPICVSKA GNKPIRYTSK ASPTVEMRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1775142363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRRT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-40ERF family protein