PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020269-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92489.5 Da    PI: 6.1783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020269-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-181876357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  WALNUT_00020269-RA 18 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                        6789*****************************************************97 PP

2START1717.8e-541673742204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aeea++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d + W ++++  ++l +i +g  g+
  WALNUT_00020269-RA 167 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDCPSWFRDCRCLDVLSAIPTGngGT 256
                         689*******************************************************.9999999999********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l++++++a+++l++ Rdf+++Ry+ +l +g++vi+ +S++  +  p+   + s+vRae+lpSg+li+p+++g+s +++v+hvdl+++++
  WALNUT_00020269-RA 257 IELIYMQTYAPTTLAAaRDFWMLRYTASLDDGSLVICVRSLTTSTGGPSgppNTSFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSV 347
                         *******************************************9999988999************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+ + ++k++ a+l++ +
  WALNUT_00020269-RA 348 PEVLRPLYESSKILAQKMTIAALRHIR 374
                         **********************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.581377IPR001356Homeobox domain
SMARTSM003894.2E-151581IPR001356Homeobox domain
PfamPF000464.8E-161876IPR001356Homeobox domain
SuperFamilySSF466891.71E-161880IPR009057Homeodomain-like
CDDcd000862.98E-161878No hitNo description
Gene3DG3DSA:1.10.10.601.7E-182076IPR009057Homeodomain-like
CDDcd146861.79E-670109No hitNo description
PROSITE profilePS5084826.711157385IPR002913START domain
CDDcd088758.17E-69161377No hitNo description
Gene3DG3DSA:3.30.530.203.1E-23165371IPR023393START-like domain
SMARTSM002341.8E-51166376IPR002913START domain
PfamPF018521.4E-51167374IPR002913START domain
SuperFamilySSF559617.69E-38167378No hitNo description
SuperFamilySSF559615.63E-6414499No hitNo description
SuperFamilySSF559615.63E-6527601No hitNo description
PfamPF086701.3E-49701845IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MALSMHKDSA NKHMDTSKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYDNGYMRQ  120
QLQSASGTTT DNSCESVVMS GQQQQQQNPT PQHPQRDANN PAGLLAIAEE ALAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDCPSWFRDC  240
RCLDVLSAIP TGNGGTIELI YMQTYAPTTL AAARDFWMLR YTASLDDGSL VICVRSLTTS  300
TGGPSGPPNT SFVRAEMLPS GYLIRPCEGG GSIIHIVDHV DLDAWSVPEV LRPLYESSKI  360
LAQKMTIAAL RHIRQIAQET SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFADDGWSL  420
LGSDGVEDVT IMVNSSPSKF LGSQYSTSMF STFGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLRA SPFAVPCARP GGFPGSQVIL PLAHTVEHEE FLEVVRLEGH  540
AFSPEDVALA RDMYLLQLCS GVDENAVGAS AQLVFAPIDE SFADDAPLLP SGFRVIPLDP  600
KTDGPAATRT LDLASTLEVG AGGARPASEA DLNSYNLRSV LTIAFQFTFE NHLRDNVAAM  660
ARQYVRSVVG SVQRVAMAIS PSRLSSHAGP KPLPGSPEAL TLAQWICRGY RVHTGGELFQ  720
VDSQAGDAIL KQLWHHSDAI LCCSVKTNAS PVFTFANQAG LDMLETTLVA LQDIMLDKIL  780
DEAGRKILCS EFSKIMQQGF AYLPAGLCVS SMGRPLSYEQ AITWKVLDDD DSNHCLAFMF  840
INWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4515600.0KJ451560.1 Betula luminifera class III HD-Zip protein HDZ1 (HDZ1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847862.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2I4GVE40.0A0A2I4GVE4_JUGRE; homeobox-leucine zipper protein ATHB-14-like isoform X1
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]