PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020265-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 871aa    MW: 96556.5 Da    PI: 6.6488
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020265-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1877135357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  WALNUT_00020265-RA  77 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 135
                         5679*****************************************************97 PP

2START176.51.6e-552214292205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+
  WALNUT_00020265-RA 221 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGT 310
                         7899******************************************************.8888888888****************9999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++ +s +++v+h+dl+ +++
  WALNUT_00020265-RA 311 IELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGSGSIIHIVDHMDLEPWSV 401
                         ***********************************************9988899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s+++ ++kt++ +l+++++
  WALNUT_00020265-RA 402 PEVLRPLYESSTVLAQKTTMTALRQLRQ 429
                         ***********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.54872136IPR001356Homeobox domain
SMARTSM003891.2E-1574140IPR001356Homeobox domain
SuperFamilySSF466891.15E-1676140IPR009057Homeodomain-like
CDDcd000861.82E-1677137No hitNo description
PfamPF000466.1E-1678135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-1879135IPR009057Homeodomain-like
CDDcd146861.47E-6129168No hitNo description
PROSITE profilePS5084825.02211426IPR002913START domain
CDDcd088753.46E-78215431No hitNo description
Gene3DG3DSA:3.30.530.202.2E-23220427IPR023393START-like domain
SMARTSM002343.7E-40220430IPR002913START domain
SuperFamilySSF559611.79E-37220431No hitNo description
PfamPF018525.4E-53221429IPR002913START domain
PfamPF086702.1E-52728870IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MNNSESVAGT RSDNAELDLD TRLCRWIDFR FVSLLLLWSS SKCFELSLRK QSYLDFSWLF  60
WMAMSCKDGK LAMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  120
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQH  180
TQNTTLATKD TSCESVVTSG QHHLTAQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  240
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  300
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVLE DGSLVVCERS LKNTQNGPSM  360
PPVQHFVRAE MLPSGYLIRP CEGSGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVLAQKTT  420
MTALRQLRQI AHEVSQSNTT GWARRPAALR ALSQRLSRGF NEALNGFTDE GWSMMGNDGM  480
DDVTILVNSS PDKLMGLNLP FSNGFPAVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  540
ADNNIDAYSA AAVKIGPCSL PGSRVGSFGG QVILPLAHTM EHEELCSGMD ENAVGTCAEL  600
IFAPIDASFA DDAPLLPSGF RIIPLDSGKE ASSPNRTLDL ASALEIGPAG NRTSTDYSAN  660
AGSVRSVMTI AFEFAYESHM QEHVASMARQ YVRSIISSVQ RVALALSPSH LSSHAGLRPP  720
LGTPEAQTLA RWICQSYRCY MGVELLKSGN EGSEANLKTL WHHSDAIMCC SMKALPVFTF  780
ANQAGLDMLE TTLVALQDIT LEKIFDDHGR KTLFSEFPQI MQQGFACLQG GICLSSMGRP  840
VSYERAVAWK VLNEEENAHC ICFMFVNWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847857.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
RefseqXP_018847858.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2I4GVE00.0A0A2I4GVE0_JUGRE; homeobox-leucine zipper protein ATHB-15
STRINGcassava4.1_001672m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]