PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019923-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 291aa    MW: 30780.5 Da    PI: 9.8363
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019923-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.7e-3956139284
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 
                         a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+   a+ s+s++++
  WALNUT_00019923-RA  56 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGGSVSQQGA 139
                         789******************************************************************988544444444332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-3261151IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01662116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDPKGSTTAK QPQQVPNFLS LPQPQQQPNM GENKPAEIKD FQIVIADKEE GKKQLAPKRS  60
SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE PSIIAATGTG  120
TIPASALAAA GGSVSQQGAS LSAGLHQKID DLGGSSIGLG SRTSWAMVGG NLGRPHVATG  180
LWPPVSGFGF QSSSGPSTAN LGSESSNYLQ KIGFPGFDLP ATPMSFTSIL GGNNQQLPGL  240
ELGLSQDGHI GVLNPQALSQ IYQQMGQARV QQQQQHQHQP PAKDDSQGSG Q
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00384DAPTransfer from AT3G27010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660729.11e-166PREDICTED: transcription factor TCP20
SwissprotQ9LSD59e-91TCP20_ARATH; Transcription factor TCP20
TrEMBLF6H4631e-166F6H463_VITVI; Putative uncharacterized protein
STRINGVIT_14s0068g01690.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.11e-75TCP family protein