PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019640-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 243aa    MW: 26340.2 Da    PI: 5.3629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019640-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-194089255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  WALNUT_00019640-RA 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSLEAAMAYDAAARKLYG 89
                        69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-203999No hitNo description
Gene3DG3DSA:3.30.730.102.4E-304098IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-214098IPR016177DNA-binding domain
PfamPF008475.6E-144089IPR001471AP2/ERF domain
PROSITE profilePS5103222.0494097IPR001471AP2/ERF domain
SMARTSM003801.4E-3340103IPR001471AP2/ERF domain
PRINTSPR003671.8E-94152IPR001471AP2/ERF domain
PRINTSPR003671.8E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLKSDMGLVE RKLLVRKPAQ ASSRKGCMRG KGGPENAMCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSLEAAMAY DAAARKLYGS EAKLNLPDLS TINKSQAHPA TSNTSHISQN  120
SSGTTSTSST CSSNNSAIFR DDDDVTPQVL YQNSSALSFT GENMEPGEKQ AGYKSVNFSE  180
NEADGIDGIW GSANSSFPAF DETIWVEAAM SLDFPFMMGD SGAFSGNLVD GSGRETLHSQ  240
WCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-174197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843837.10.0PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2I4GIW50.0A0A2I4GIW5_JUGRE; dehydration-responsive element-binding protein 2D-like
STRINGGorai.009G197800.17e-77(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-50ERF family protein