PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019564-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 279aa    MW: 30442.7 Da    PI: 7.6254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019564-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-192878256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr++  +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  WALNUT_00019564-RA 28 RFVGVRQRL-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 78
                        589***999.7*********43...36**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.9152885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-272885IPR001471AP2/ERF domain
CDDcd000182.81E-292886No hitNo description
PfamPF008473.3E-142878IPR001471AP2/ERF domain
SMARTSM003805.8E-362891IPR001471AP2/ERF domain
PRINTSPR003672.0E-62940IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-192986IPR016177DNA-binding domain
PRINTSPR003672.0E-65167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAGAETTKIT IAATTNAKFQ SSKPVARRFV GVRQRLSGRW VAEIKDSSQR VRLWLGTYDT  60
PEEAARAYDE AARALRGENA RTNFAVPVNP SSNISGTSPC NGELPSQPDG RHGLSFSSLK  120
AKLSKNLQSI MARTSENKSS KSRVSDQSTF AKIFHFRNYQ YQGGRMEMNN AEKAVQPSII  180
VPHMETEPSS WESSSVSECS AEWIGYRQHG LDSDGSDIGE VSFGRDHGFL DQIGGWNMDS  240
PELGVDGGEE EGSRSKRFKV SSSVVVPPTF TGSPNIGEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661581.11e-127PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLA5BB591e-127A5BB59_VITVI; Putative uncharacterized protein
STRINGPOPTR_0014s07280.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-15related to AP2 11